In jvfe/go2cell: Get Cell Types Related to Gene Ontology IDs

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
devtools::load_all()

go2cell

By using Wikidata, go2cell links Gene Ontology terms to cell types, therefore enriching Omics results with open semantic knowledge.

Installation

You can install the latest version of go2cell from GitHub with:

install.packages("remotes")
remotes::install_github("jvfe/go2cell")

Quickstart

Suppose we want to retrieve cell types with gene markers related to GO terms 'muscle contraction' and 'glycoprotein metabolic process':

library(go2cell)

go_ids <- c("GO:0006936", "GO:0009100")

results <- go2cell(go_ids)

knitr::kable(head(results))

jvfe/go2cell documentation built on Sept. 11, 2023, 4:18 a.m.