write.sqlite: Export MSThermResultSet to an SQLite database.

In jvolkening/r-mstherm: Analyze MS/MS Protein Melting Data

Description

Exports and MSThermResultSet object to a new SQLite database file. Each model (specific to a given replicate and protein) is exported as an individual record. The schema used for the 'data' table can be seen in the code below.

Usage

write.sqlite(res, file)

Arguments

res	An MSThermResultSet object
file	Path to the output sqlite database to be created

Value

Nothing

Examples

control <- system.file("extdata", "demo_project/control.tsv", package="mstherm")
annots  <- system.file("extdata", "demo_project/annots.tsv",  package="mstherm")
expt    <- MSThermExperiment(control, annotations=annots)
expt    <- normalize_to_std(expt, "cRAP_ALBU_BOVIN", plot=FALSE)
res     <- model_experiment(expt, bootstrap=FALSE, np=2)

fn <- tempfile(fileext = ".sqlite")
write.sqlite(res, fn)
unlink(fn) # for example only

jvolkening/r-mstherm documentation built on May 20, 2019, 5:21 a.m.