process_distance: Determine the position of each cell within the trajectory
In jw156605/SLICER: Selective Locally Linear Inference of Cellular Expression Relationships
Description
Usage
Arguments
Value
Examples
Description
This function calculates the geodesic distance from the start
cell to each other cell. This value corresponds to the
distance a cell has migrated through the process described by
the cell trajectory.
Usage
1
process_distance(traj_graph, start)
Arguments
traj_graph
Nearest neighbor graph built from LLE embedding
start
Index of starting cell
Value
Vector of distances
Examples
1
2
3
4
5
6
7
genes=1:200
cells=sample(1:500,30)
k=10
traj_lle = lle::lle(traj[cells,genes],m=2,k)$Y
traj_graph = conn_knn_graph(traj_lle,5)
start = 1
dists = process_distance(traj_graph,start)
jw156605/SLICER documentation built on May 20, 2019, 5:21 a.m.
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Description Usage Arguments Value Examples
Description
This function calculates the geodesic distance from the start cell to each other cell. This value corresponds to the distance a cell has migrated through the process described by the cell trajectory.
Usage
1 | process_distance(traj_graph, start)
|
Arguments
traj_graph |
Nearest neighbor graph built from LLE embedding |
start |
Index of starting cell |
Value
Vector of distances
Examples
1 2 3 4 5 6 7 | genes=1:200
cells=sample(1:500,30)
k=10
traj_lle = lle::lle(traj[cells,genes],m=2,k)$Y
traj_graph = conn_knn_graph(traj_lle,5)
start = 1
dists = process_distance(traj_graph,start)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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