Man pages for jweile/yogiseq
Lightweight sequence analysis package
| char.at | return a character froma string |
| commonPrefix | Determine the length of the a common prefix between two... |
| length.yogiseq | length method for yogiseq |
| new.alignment | creates a new Needleman-Wunsch global alignment |
| new.bc.matcher | Create new barcode matcher |
| new.fastq.parser | creates a new fastq parser object |
| new.kmer.search | K-mer search |
| new.sam.streamer | construct new SAM streamer object |
| new.sequence | constructor to create a new sequence object |
| parseMDZ | Tokenize MDZ string, breaking it down into a list of number... |
| print.yogiseq | print method for yogiseq |
| readFASTA | read sequences from fasta file |
| reverseComplement | reverse complement of sequence |
| searchSuffixTree | Search for a query string within a suffix tree with or... |
| subseq | subsequence |
| suffixTree | Construct a suffix tree for a given string. |
| summary.yogiseq | summary method for yogiseq |
| to.char.array | string to character vector |
| varcallCandidates | Find variant call candidates from a sam file line |
| writeFASTA | write sequences to fasta file |
| writeFASTQ | write sequences to fastq file |
