new.sam.streamer: construct new SAM streamer object
In jweile/yogiseq: Lightweight sequence analysis package
new.sam.streamer R Documentation
construct new SAM streamer object
Description
can be used to stream
chunks of SAM files to be processed iteratively. For each chunk,
the individual columns as well as parsed flags, MDZ and CIGAR strings
are made available
Usage
new.sam.streamer(sam.file, chunkSize = 100)
Arguments
sam.file
the input sam file or connection object
chunkSize
how many lines to process at once
Value
a sam.streamer object with methods to access the content
jweile/yogiseq documentation built on July 8, 2022, 12:48 a.m.
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| new.sam.streamer | R Documentation |
construct new SAM streamer object
Description
can be used to stream chunks of SAM files to be processed iteratively. For each chunk, the individual columns as well as parsed flags, MDZ and CIGAR strings are made available
Usage
new.sam.streamer(sam.file, chunkSize = 100)
Arguments
sam.file |
the input sam file or connection object |
chunkSize |
how many lines to process at once |
Value
a sam.streamer object with methods to access the content
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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