read.ab1: This function reads in a given abi1-file.

In kaischmid/SangeR: SangeR

This function reads in a given abi1-file.

Description

This function reads in a given abi1-file.

Usage

read.ab1(
  filename,
  delimiter = "_",
  ID_pos = 1,
  genename = "",
  genename_pos = 2,
  cutoff = 0.05,
  min_seq_len = 20,
  offset = 33
)

Arguments

filename	location of a ab1 file.
delimiter	delimiter in genename/ID of ab1 file
ID_pos	position of ID in genename/ID of ab1 file
genename	gene name of analysed gene in ab1 file
genename_pos	position of genename in genename/ID of ab1 file
cutoff	cutoff for Basecall of the fastq. Default: 0.05
min_seq_len	minimum sequence length for Basecall of the fastq. Default: 20
offset	Offset for Basecall of the fastq. Default: 33

Value

Objekt with all information genename,bnummer,filename,abif,fastq.

kaischmid/SangeR documentation built on April 15, 2022, 2:22 a.m.