read_ptmsea: Reads a dataframe of Peptides IDs and their Scores and run...

In kalganem/creedenzymatic: creedenzymatic

Reads a dataframe of Peptides IDs and their Scores and run PTM-SEA

Description

reads a dataframe of Peptides IDs and their Scores (LFC, p-value, ... etc) and run PTM-SEA

Usage

read_ptmsea(df, ...)

Arguments

df	dataframe, must have at least Peptide and Score columns
...	arguments passed to run ptm-sea function
lib	searched PTM-SEA libraries "kinase-substrate" or "all" (default is "kinase-substrate" which will return only kinase libraries like ChengKSIN, PTMsigDB, PhosDAll)

Details

This function a dataframe of Peptides IDs and their Scores (LFC, p-value, ... etc) and run PTM-SEA

Value

dataframe, Ranked and quartiled table

kalganem/creedenzymatic documentation built on March 31, 2024, 11:58 a.m.