Files in kamalfartiyal84/compEpiTools
Tools for computational epigenomics
DESCRIPTION
NAMESPACE
NEWS
R/GR2fasta.R
R/GRanges2ucsc.R
R/GRangesInPromoters.R
R/GRannotate.R
R/GRannotateSimple.R
R/GRbaseCoverage.R
R/GRcoverage.R
R/GRcoverageInbins.R
R/GRcoverageSummit.R
R/GRenrichment.R
R/GRmidpoint.R
R/GRsetwidth.R
R/TSS.R
R/countOverlapsInBins.R
R/distanceFromTSS.R
R/enhancers.R
R/featuresLength.R
R/findLncRNA.R
R/getPromoterClass.R
R/heatmapData.R
R/heatmapPlot.R
R/makeGtfFromDb.R
R/matchEnhancers.R
R/overlapOfGRanges.R
R/palette2d.R
R/plotStallingIndex.R
R/simplifyGOterms.R
R/stallingIndex.R
R/topGOres.R
R/ucsc2GRanges.R
R/unionMaxScore.R
inst/CITATION
inst/extdata/CGIgr_mm9.Rdata
inst/extdata/H3K4me1.bam
inst/extdata/H3K4me1.bam.bai
inst/extdata/H3K4me1GR.Rda
inst/extdata/H3K4me3.bam
inst/extdata/H3K4me3.bam.bai
inst/extdata/H3K4me3GR.Rda
inst/extdata/Pol2.bam
inst/extdata/Pol2.bam.bai
inst/extdata/Pol2GR.Rda
man/GR2fasta-methods.Rd
man/GRanges2ucsc-methods.Rd
man/GRangesInPromoters-methods.Rd
man/GRannotate-methods.Rd
man/GRannotateSimple.Rd
man/GRbaseCoverage-methods.Rd
man/GRcoverage-methods.Rd
man/GRcoverageSummit-methods.Rd
man/GRenrichment-methods.Rd
man/GRmidpoint-methods.Rd
man/GRsetwidth.Rd
man/TSS.Rd
man/compEpiTools-package.Rd
man/countOverlapsInBins-methods.Rd
man/distanceFromTSS-methods.Rd
man/enhancers.Rd
man/findLncRNA.Rd
man/getPromoterClass-methods.Rd
man/heatmapData.Rd
man/heatmapPlot.Rd
man/makeGtfFromDb.Rd
man/matchEnhancers.Rd
man/overlapOfGRanges-methods.Rd
man/palette2d.Rd
man/plotStallingIndex.Rd
man/simplifyGOterms.Rd
man/stallingIndex.Rd
man/topGOres.Rd
man/ucsc2GRanges.Rd
man/unionMaxScore-methods.Rd
vignettes/compEpiTools.rnw
