format_pubmed_xml: Extract all pubmed data for list of PMID

In kamclean/impactr:

Extract all pubmed data for list of PMID

Description

Extract all pubmed data for list of PMID

Usage

format_pubmed_xml(
  pmid,
  var_id = TRUE,
  var_journal = TRUE,
  var_author = TRUE,
  var_collaborator = TRUE,
  var_metadata = TRUE,
  var_history = TRUE,
  var_registry = F,
  var_abstract = F,
  n_chunk = 200
)

Arguments

var_id	Extract article identification numbers (PMID, DOI, and PMC)
var_journal	Extract journal information (journal name and abbreviation, journal identification numbers, journal issue/volume/pages)
var_author	Extract author information (names with and without affiliations, overall number)
var_collaborator	Extract collaborator information (names with and without affiliations, overall number)
var_metadata	Extract article metadata (publication status, type of article)
var_history	Extract article history (dates of publication, entry onto pubmed, etc)
var_registry	Extract article registry information (registry number and location)
var_abstract	Extract article abstract
n_chunk	Maximum number within each individual API request to pubmed (suggested <200).
xml_pubmed	Vector of PMID that details are desired from.

Value

Tibble of data extracted from pubmed XML

kamclean/impactr documentation built on Jan. 11, 2023, 2:51 p.m.