NEWS.md

In kapsner/PCRBiasCorrection: Correct Bias in DNA Methylation Analyses

rBiasCorrection NEWS

Unreleased (2025-04-05)

Other changes

• added images to vignette (a49a383)

v0.3.5 (2025-04-05)

New features

• migrating to quarto vignette engine (2e0b309)
• working on implementing better guess for nls gauss-newton method (522bce3)
• added implementation of minpack.lm nls solving with good guess of start values (2082832)
• preparing implementation of alternative algorithm using minpack.lm (426f0b9)

Bug fixes

• further rounding of unit tests (047bde8)
• removed another aes_string (fb586dc)
• fixed further deprecation warnings from ggplot2 (18a12c9)
• adding importfrom ggplot2 .data to fix rcmdcheck error (ee3b755)
• fix equation presentation in quarto vignette (99b3730)
• added lazydata:true to description (ce12868)
• fixed example data (b5dc1f5)
• fix issue with deprecated aes_string from ggplot2 (1a5d4f0)
• removing snapshot-value tests due to cran issues (94084af)
• added seed before call to minpack.lm (a7a9319)
• fixed implementation of nls_solver (d35ab8b)

Refactorings

• enhanced code, removed redundancies (c3466e4)
• cubic-minmax also using nls_solver (b3a5a93)
• added zzz.r and option to select nls algo (45dd674)
• common nls2-code to nls_solver fun (2b2f862)
• stopifnot with understandable msgs (4fa38fe)

Tests

• again trying to ensure more robustness (0740c97)
• further rounding results for more robustness in snapshot-tests (03956e0)
• further rounding results_list to ensure more robustness of snapshot tests (b23a8c5)
• making snapshot tests more robust by rounding to 2 digits (30b87e5)
• added snapshots again (d00ec13)
• enhanced unit tests (ab66b88)
• added unit tests for new computation options (c482deb)

CI

• updated gha (fe0d16a)
• updated gha (1e2a366)
• updated lint-stage (7740e79)
• updated gha (1504faa)

Docs

• beginning with documentation of new nls options (cc6f7e5)

Other changes

• udpated news.md and description (f7ed7c9)
• removed parallel-flag from test (70ff6f5)
• updated news.md and description (384d343)
• automated gen of readme (01b1dac)
• fixed cran errors url (3873d8f)
• updated cran-comments (3674986)

Full set of changes: v0.3.4...v0.3.5

v0.3.4 (2022-06-20)

Refactorings

• removing deprecated future-multiprocess (c8e8ea1)

Tests

• fixed test errors (linting errors) (c4fe62f)

Docs

• updated vignette (0a77950)
• updated url to cran hosted vignette (2d4c2f3)

Other changes

• updated news.md (08f4f48)
• added dependencies badge (faa1eb7)
• updated lintr (5fde604)
• added news.md (d843819)
• updating package code, badges, gha (cfac06c)

Full set of changes: v0.3.3...v0.3.4

v0.3.3 (2022-02-16)

Full set of changes: v0.3.2...v0.3.3

v0.3.2 (2021-08-03)

Bug fixes

• unit tests; update to 0.3.2 (715a46d)

Full set of changes: v0.3.1...v0.3.2

v0.3.1 (2021-06-21)

Full set of changes: v0.3.0...v0.3.1

v0.3.0 (2021-05-17)

v0.2.9 (2021-03-29)

Full set of changes: v0.2.8...v0.2.9

v0.2.8 (2021-03-27)

Full set of changes: v0.2.7...v0.2.8

v0.2.7 (2021-03-01)

Full set of changes: v0.2.6...v0.2.7

v0.2.6 (2021-02-13)

Full set of changes: v0.2.5...v0.2.6

v0.2.5 (2020-12-17)

Full set of changes: v0.2.4...v0.2.5

v0.2.4 (2020-11-16)

Full set of changes: v0.2.3...v0.2.4

v0.2.3 (2020-09-22)

Full set of changes: v0.2.2...v0.2.3

v0.2.2 (2020-09-13)

Full set of changes: v0.2.1...v0.2.2

v0.2.1 (2020-07-22)

Full set of changes: v0.2.0...v0.2.1

v0.2.0 (2020-07-17)

Full set of changes: v0.1.7...v0.2.0

v0.1.7 (2020-06-17)

Full set of changes: v0.1.6...v0.1.7

v0.1.6 (2020-01-18)

Full set of changes: v0.1.5...v0.1.6

v0.1.5 (2019-12-16)

Full set of changes: v0.1.4...v0.1.5

v0.1.4 (2019-11-27)

Full set of changes: v0.1.3...v0.1.4

v0.1.3 (2019-11-09)

Full set of changes: v0.1.0.9001...v0.1.3

v0.1.0.9001 (2019-07-28)

Full set of changes: v0.0.1.9002...v0.1.0.9001

v0.0.1.9002 (2019-06-24)

Full set of changes: f80b0c1...v0.0.1.9002

kapsner/PCRBiasCorrection documentation built on June 15, 2025, 4:14 a.m.