linktaxa: Link two species lists

In kardinal-eros/linktaxa: Link two related but not necessarily identical species lists

Link two species lists

Description

A single function internally calling subroutines and returning an ordered data frame of string matches or writes these results to a csv file.

Usage

linktaxa(x, y, order = TRUE, file, sep = ",", overwrite = FALSE, ...)

Arguments

x	character.
y	character.
order	logical.
file	character. Output file name.
sep	character. Field separator string of write.csv. All other options to read.csv are masked and the functions alters the defaults for row.names which is set to FALSE because it has no meaning.
overwrite	logical. Overwrite existing files.
...	arguments passed to queuePenalty.

Details

If order is TRUE results are ordered according to penalty score, if FASLE input order of x is retained.

Value

a data.frame.

Author(s)

Roland Kaiser s

See Also

isWhat, stripAll

Examples

data(taxa)

res <- linktaxa(taxa, reference)
head(res[, 1:3])

tail(res[, 1:3])

kardinal-eros/linktaxa documentation built on Jan. 13, 2024, 9:15 p.m.