generateProfile: Generate KS profile

In karlkumbier/rprofiler: R profile generator

Generate KS profile

Description

Core function for generating KS profile for all wells on a plate.

Usage

generateProfile(
  plate,
  xmeta,
  plate.dir,
  control.variable,
  controls,
  type = "cbfeature",
  n.bs = 0,
  n.core = 1
)

Arguments

plate	(character) identifier for plate to generate KS profiles for. Must match a plateID in xmeta.
xmeta	(data.table) well-level metadata as returned by loadMeta.
plate.dir	(character) path to plate directory, containing the plate directory with image features for the selected plate.
type	(character) type of features to use for KS profile generation (one of: cbfeature, operetta)
n.core	(int) number of cores to parallelize over.
control.cl	(character) cell lines to use as KS reference population.
control.cpd	(character) compound to use as KS reference population.
control.usg	(character) cell line usage to set as KS reference population.

Value

None. Writes KS profiles to plate directory.

karlkumbier/rprofiler documentation built on Dec. 14, 2024, 5:31 a.m.