API for kasparmartens/bayesianHMM
Ensemble MCMC for Hidden Markov Models

Global functions
FHMM Source code
add_noise Source code
compute_marginal_distribution Source code
construct_all_hamming_balls Source code
construct_all_restricted_space Source code
construct_restricted_space Source code
convert_X_to_x Source code
correct_states Source code
crossover Source code
crossover_mat Source code
crossovers Source code
decimal_to_binary_mapping Source code
ensemble_FHMM Source code
ensemble_discrete Source code
ensemble_gaussian Source code
forward_backward Source code
forward_backward_fast Source code
forward_backward_rcpp Source code
generate_FHMM Source code
generate_FHMM_transition_mat Source code
generate_discrete_HMM Source code
generate_discrete_obs Source code
generate_gaussian_obs Source code
generate_nonmarkov_seq Source code
generate_t_obs Source code
gibbs Source code
gibbs_sampling_hmm Source code
hamming_ball Source code
hmm_loglikelihood Source code
initial_state_update Source code
match_col Source code
parallel_tempering Source code
plot_logposterior Source code
plot_logposteriors Source code
plot_trace_of_mu Source code
plot_traces_of_mu Source code
postprocess_chains Source code
postprocess_chains.FHMM Source code
postprocess_chains.ensembleHMM Source code
prop_transitions Source code
rdirichlet_mat Source code
summarise_crossover_stats Source code
summarise_transition_mat Source code
transition_mat_update Source code
visualise_accuracy_and_switch_rate Source code
visualise_crossovers Source code
visualise_crossovers_helper Source code
visualise_discrete_obs Source code
visualise_gaussian_obs Source code
visualise_hidden_states Source code
visualise_hidden_states_parallel_tempering Source code
visualise_trace_of_X Source code
visualise_trace_of_x Source code
visualise_trace_of_x.FHMM Source code
visualise_trace_of_x.ensembleHMM Source code
visualise_traces_of_X Source code
visualise_traces_of_x Source code
visualise_transition_mat Source code
visualise_transition_mat_parallel_tempering Source code
kasparmartens/bayesianHMM documentation built on May 18, 2017, 4:03 p.m.