Ragraph-class | R Documentation |
Class Ragraph
is used to handle libgraph
representations of R graph objects.
Objects can be created by calls to the function agopen
.
agraph
:Object of class "externalptr"
: A C
based structure containing the libgraph information
laidout
:Object of class "logical"
: Whether or
not this graph has been laid out or not.
layoutType
:Object of class "character"
: The
layout method used for this object
edgemode
:Object of class "character"
: The
edgemode for this graph - “directed” or
“undirected”
AgNode
:Object of class "list"
: A list of
AgNode
objects.
AgEdge
:Object of class "list"
: A list of
AgEdge
objects.
boundBox
:Object of class "boundBox"
: Defines
the bounding box of the plot.
bg
:Object of class "character"
: The background
color.
fg
:Object of class "character"
: The foreground
color.
signature(object = "Ragraph")
: A brief summary of
the contents
signature(object = "Ragraph")
: Returns the
external libgraph pointer
signature(object = "Ragraph")
: Returns the
laidout
slot
signature(object = "Ragraph")
: Returns the
bounding box.
signature(object = "Ragraph")
: Returns the edge
list.
signature(object = "Ragraph")
: Returns the node
list.
signature(object = "Ragraph")
: Retrieves the
edgemode of this object.
signature(object = "Ragraph")
: Retrieves the
method used for the layout of this graph.
signature(object = "Ragraph")
: Returns a
vector of the names of the edges in this graph.
signature(self= "Ragraph")
:
Gets default attributes of the given graph.
signature(self= "Ragraph", attr="vector", value="vector")
:
Sets default attributes of the given graph.
signature(self= "Ragraph", attr="vector")
:
Gets attributes of the given graph.
signature(self= "Ragraph", attr="vector", value="vector")
:
Sets attributes of the given graph.
signature(self= "Ragraph", cluster="numeric", attr="vector")
:
Gets attributes of a cluster for the given graph.
signature(self= "Ragraph", cluster="numeric", attr="vector", value="vector")
:
Sets attributes of a cluster for the given graph.
signature(self= "Ragraph",attr="missing")
:
Gets default attributes of the given edge.
signature(self= "Ragraph", attr="vector", value="vector")
:
Sets default attributes of the given edge.
signature(self= "Ragraph", from="vector", to="vector", attr="vector")
:
Gets attributes of the given edge.
signature(self= "Ragraph", from="vector", to="vector", attr="vector", value="vector")
:
Sets attributes of the given edge.
signature(self= "Ragraph",attr="missing")
:
Gets default attributes of the given node.
signature(self= "Ragraph", attr="vector", value="vector")
:
Sets default attributes of the given node.
signature(self= "Ragraph", n="vector", attr="vector")
:
Gets attributes of the given node.
signature(self= "Ragraph", n="vector", attr="vector", value="vector")
:
Sets attributes of the given node.
signature(object = "Ragraph")
: Returns a two
element list, the first element contains a numerical vector with
the 'x' positions of every node in this graph, and the second
element contains a numerical vector with the 'y' positions for
every node in the graph.
signature(object = "Ragraph")
: Returns a
vector with the heights of every node in the graph
signature(object = "Ragraph")
: Returns a
vector with the left width of every node in the graph.
signature(object = "Ragraph")
: Returns a
vector with the right width of every node in the graph.
Jeff Gentry and Li Long <li.long@isb-sib.ch>
agopen
set.seed(123) V <- letters[1:10] M <- 1:4 g1 <- randomGraph(V, M, .2) z <- agopen(g1,"foo") z ## The various methods in action ## These methods are all used to obtain positional information about nodes getNodeXY(z) getNodeHeight(z) getNodeLW(z) getNodeRW(z) ## Retrieve information about the edges in the graph edgeNames(z) edgemode(z) ## These get information about the layout laidout(z) layoutType(z) boundBox(z) ## Used to retrieve the entire list of edges or nodes AgEdge(z) AgNode(z)
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