| Ragraph-class | R Documentation |
Class Ragraph is used to handle libgraph
representations of R graph objects.
Objects can be created by calls to the function agopen.
agraph:Object of class "externalptr": A C
based structure containing the libgraph information
laidout:Object of class "logical": Whether or
not this graph has been laid out or not.
layoutType:Object of class "character": The
layout method used for this object
edgemode:Object of class "character": The
edgemode for this graph - “directed” or
“undirected”
AgNode:Object of class "list": A list of
AgNode objects.
AgEdge:Object of class "list": A list of
AgEdge objects.
boundBox:Object of class "boundBox": Defines
the bounding box of the plot.
bg:Object of class "character": The background
color.
fg:Object of class "character": The foreground
color.
signature(object = "Ragraph"): A brief summary of
the contents
signature(object = "Ragraph"): Returns the
external libgraph pointer
signature(object = "Ragraph"): Returns the
laidout slot
signature(object = "Ragraph"): Returns the
bounding box.
signature(object = "Ragraph"): Returns the edge
list.
signature(object = "Ragraph"): Returns the node
list.
signature(object = "Ragraph"): Retrieves the
edgemode of this object.
signature(object = "Ragraph"): Retrieves the
method used for the layout of this graph.
signature(object = "Ragraph"): Returns a
vector of the names of the edges in this graph.
signature(self= "Ragraph"):
Gets default attributes of the given graph.
signature(self= "Ragraph", attr="vector", value="vector"):
Sets default attributes of the given graph.
signature(self= "Ragraph", attr="vector"):
Gets attributes of the given graph.
signature(self= "Ragraph", attr="vector", value="vector"):
Sets attributes of the given graph.
signature(self= "Ragraph", cluster="numeric", attr="vector"):
Gets attributes of a cluster for the given graph.
signature(self= "Ragraph", cluster="numeric", attr="vector", value="vector"):
Sets attributes of a cluster for the given graph.
signature(self= "Ragraph",attr="missing"):
Gets default attributes of the given edge.
signature(self= "Ragraph", attr="vector", value="vector"):
Sets default attributes of the given edge.
signature(self= "Ragraph", from="vector", to="vector", attr="vector"):
Gets attributes of the given edge.
signature(self= "Ragraph", from="vector", to="vector", attr="vector", value="vector"):
Sets attributes of the given edge.
signature(self= "Ragraph",attr="missing"):
Gets default attributes of the given node.
signature(self= "Ragraph", attr="vector", value="vector"):
Sets default attributes of the given node.
signature(self= "Ragraph", n="vector", attr="vector"):
Gets attributes of the given node.
signature(self= "Ragraph", n="vector", attr="vector", value="vector"):
Sets attributes of the given node.
signature(object = "Ragraph"): Returns a two
element list, the first element contains a numerical vector with
the 'x' positions of every node in this graph, and the second
element contains a numerical vector with the 'y' positions for
every node in the graph.
signature(object = "Ragraph"): Returns a
vector with the heights of every node in the graph
signature(object = "Ragraph"): Returns a
vector with the left width of every node in the graph.
signature(object = "Ragraph"): Returns a
vector with the right width of every node in the graph.
Jeff Gentry and Li Long <li.long@isb-sib.ch>
agopen
set.seed(123)
V <- letters[1:10]
M <- 1:4
g1 <- randomGraph(V, M, .2)
z <- agopen(g1,"foo")
z
## The various methods in action
## These methods are all used to obtain positional information about nodes
getNodeXY(z)
getNodeHeight(z)
getNodeLW(z)
getNodeRW(z)
## Retrieve information about the edges in the graph
edgeNames(z)
edgemode(z)
## These get information about the layout
laidout(z)
layoutType(z)
boundBox(z)
## Used to retrieve the entire list of edges or nodes
AgEdge(z)
AgNode(z)
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