preprocessRaw: Creation of a MethylSet without normalization
In kasperdanielhansen/minfi: Analyze Illumina Infinium DNA methylation arrays
View source: R/preprocessRaw.R
preprocessRaw R Documentation
Creation of a MethylSet without normalization
Description
Converts the Red/Green channel for an Illumina methylation array into
methylation signal, without using any normalization.
Usage
preprocessRaw(rgSet)
Arguments
rgSet
An object of class RGChannelSet.
Details
This function takes the Red and the Green channel of an Illumina
methylation array, together with its associated manifest object and
converts it into a MethylSet containing the methylated and
unmethylated signal.
Value
An object of class MethylSet
Author(s)
Kasper Daniel Hansenkhansen@jhsph.edu.
See Also
RGChannelSet and MethylSet
as well as IlluminaMethylationManifest.
Examples
if (require(minfiData)) {
dat <- preprocessRaw(RGsetEx)
slot(name="preprocessMethod", dat)[1]
}
kasperdanielhansen/minfi documentation built on May 4, 2024, 12:04 p.m.
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View source: R/preprocessRaw.R
| preprocessRaw | R Documentation |
Creation of a MethylSet without normalization
Description
Converts the Red/Green channel for an Illumina methylation array into methylation signal, without using any normalization.
Usage
preprocessRaw(rgSet)
Arguments
rgSet |
An object of class |
Details
This function takes the Red and the Green channel of an Illumina
methylation array, together with its associated manifest object and
converts it into a MethylSet containing the methylated and
unmethylated signal.
Value
An object of class MethylSet
Author(s)
Kasper Daniel Hansenkhansen@jhsph.edu.
See Also
RGChannelSet and MethylSet
as well as IlluminaMethylationManifest.
Examples
if (require(minfiData)) {
dat <- preprocessRaw(RGsetEx)
slot(name="preprocessMethod", dat)[1]
}
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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