recla: Example kinship, phenotype, and covariate data

In kbroman/lmmlite: Simple LMM Fitter for QTL Mapping

Example kinship, phenotype, and covariate data

Description

Estimated kinship matrix, phenotypes, and covariates for diversity outcross mice, taken from Recla et al. (2014) and Logan et al. (2013)

Format

A list with three components, kinship, pheno, and covar, each a matrix.

Details

These are data for a set of diversity outcross mice. The kinship matrix was calculated from MUGA array data, using the R/qtl2 package.

Source

QTL Archive, https://phenome.jax.org/projects/Recla1

References

Recla JM, Robledo RF, Gatti DM, Bult CJ, Churchill GA, Chesler EJ (2014) Precise genetic mapping and integrative bioinformatics in Diversity Outbred mice reveals Hydin as a novel pain gene. Mamm Genome 25:211-222

Logan RW, Robledo RF, Recla JM, Philip VM, Bubier JA, Jay JJ, Harwood C, Wilcox T, Gatti DM, Bult CJ, Churchill GA, Chesler EJ (2013) High-precision genetic mapping of behavioral traits in the diversity outbred mouse population. Genes Brain Behav 12:424-437

Examples

data(recla)

kbroman/lmmlite documentation built on May 10, 2023, 6:05 p.m.