write_probs: Write genotype probabilities to database
In kbroman/qtl2sqlite: Storage of QTL Objects in SQLite Databases

Description Usage Arguments Details Value See Also Examples

Write genotype probabilities to database

1	write_probs(db, probs, map = NULL, quiet = TRUE)

`db`	Either a filename for a SQLite database, or a connection to such a database.
`probs`	Genotype probabilities, as calculated by `calc_genoprob`.
`map`	Optional map of marker positions (a list of vectors of positions).
`quiet`	If FALSE, print some information about progress.

The genotype probabilities are written to a single SQLite database file. If the file exists, it is overwritten.

The data are placed in a series of tables.

probs - the probabilities, with fields mat_index, marker, prob
markers - marker information, with fields chr, marker, and marker_index. If map was provided, there's also a field pos.
chr - chromosome information, with fields chr, is_x_chr, and chr_index
ind - the individual IDs
geno - genotype codes
alleles - the "alleles" attribute
attributes - the "crosstype" and "alleleprobs" attributes

None. (See Details.)

read_probs

## Not run: 
library(qtl2geno)
iron <- read_cross2(system.file("extdata", "iron.zip", package="qtl2geno"))
map <- insert_pseudomarkers(iron, map, error_prob=0.002)
pr <- calc_genoprob(iron, map)

write_probs("iron.sqlite", pr, map)

## End(Not run)