| anal.all | Analyze a backcross |
| anal.leaps | Analyze a backcross by model selection methods |
| anal.mcmc | Analyze a backcross by MCMC |
| anal.multi | Simulations to test QTL analyses |
| anal.multi2 | Simulations to test QTL analyses |
| combine.mcmc | Combine multiple simulation results |
| combine.sims | Combine multiple simulation results |
| convertOutput | Convert output of anal.leaps, anal.mcmc or perm |
| convertSim | Convert simulated data into form for R/qtl |
| perm | Forward selection w/ permutation test |
| plot_res | Plot simulation results |
| qtlsim-internal | Internal qtlsim functions |
| simbc | Simulate a backcross |
| sim.mcmc | Simulations to test QTL analyses |
| sim.null | Simulate under the null hypothesis of no QTLs. |
| which.correct | Determine which QTLs were correctly identified in an analysis |
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