Tools for Analyzing Crossover Interference

bssbsb | BSS/BSB backcross data |

chiasma | Estimate chiasma distribution from crossover counts |

coincidence | Estimate coincidence function |

convertxoloc | Convert format of crossover locations data |

countxo | Estimate number of crossovers |

distance.given.two | Distance between crossovers given there are two |

est.coi | Estimate the coincidence function |

est.coi.um | Estimate the coincidence as a function of micron distance |

est.recrate | Estimate recombination rate |

find.breaks | Estimate crossover locations |

firstden | Distance to a crossover |

first.given.two | Location of first crossover given there are two |

fitGamma | Fit Gamma model |

fitStahl | Fit Stahl model |

gammacoi | Coincidence function for the gamma model |

intensity | Estimate intensity function |

ioden | Distance between crossovers |

joint.given.two | Crossover locations given there are two |

kfunc | estimate Ripley's K function |

location.given.one | Location of crossover given there is one |

recrate2scanone | Convert recrate to scanone format |

simStahl | Simulate crossover locations under the Stahl model |

stahlcoi | Coincidence function for the Stahl model |

stahlLoglik | Calculate log likelihood for Stahl model |

xoiversion | Installed version of R/xoi |

xoprob | Distribution of number of crossovers |

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