dbSpadeDownsample: A flexible version of SPADE's density-based downsampling...
In kbrulois/Dufy: A set of tools and algorithms for reducing the size of large datasets in a density-aware manner
View source: R/SPADEutilities.R
dbSpadeDownsample R Documentation
A flexible version of SPADE's density-based downsampling function
Description
This is a version of SPADE's density-based downsampling function, adapted for use with standard R matrices instead of FCS files.
Usage
dbSpadeDownsample(
data,
d = NULL,
target_number = 400,
target_pctile = NULL,
target_percent = NULL
)
Arguments
data
A numeric matrix of data where cells correspond to rows and genes correspond to columns
Value
A vector of indices corresponding to rows of data
Author(s)
Kevin Brulois
kbrulois/Dufy documentation built on May 4, 2022, 3:54 a.m.
R Package Documentation
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View source: R/SPADEutilities.R
| dbSpadeDownsample | R Documentation |
A flexible version of SPADE's density-based downsampling function
Description
This is a version of SPADE's density-based downsampling function, adapted for use with standard R matrices instead of FCS files.
Usage
dbSpadeDownsample( data, d = NULL, target_number = 400, target_pctile = NULL, target_percent = NULL )
Arguments
data |
A numeric matrix of data where cells correspond to rows and genes correspond to columns |
Value
A vector of indices corresponding to rows of data
Author(s)
Kevin Brulois
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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