Man pages for kbseah/mass2adduct
Mass Spectrometry Imaging Molecular Adduct Finder
| adductMatch | Find closest-matching known adducts for a set of mass... |
| adductMatch.massdiff | Report closest-matching adduct type for a list of mass... |
| adductMatch.massdiffhist | Report closest-matching adduct type for a mass difference... |
| adducts | Common mass spectrometry adducts |
| adducts2 | Shorter list of mass spectrometry adducts |
| analyzeIntensityCutoffsCumul | Calculate effects of applying cumulative intensity-level... |
| analyzeIntensityCutoffsDistr | Calculate effects of applying intensity-level cutoffs on mass... |
| cardinal2msimat | Convert Cardinal objects to msimat object |
| cardinal2msimat.MSContinuousImagingExperiment | Convert Cardinal MSContinuousImagingExperiment object to... |
| cardinal2msimat.MSProcessedImagingExperiment | Convert Cardinal MSProcessedImagingExperiment object to... |
| comb2M | C++ version of combn function |
| corrPairsMSI | Calculate correlations of pairs of mass peaks from MSI data |
| corrPairsMSIchunks | Calculate correlations of pairs of mass peaks from MSI data... |
| countPeaksFromDiff | Count peaks corresponding to putative adduct types |
| diffGetPeaks | Find pairs of mass peaks corresponding to a specific mass |
| diffGetPeaksIndex | Find pairs of mass peaks corresponding to a specific mass... |
| filterPeaks | Filter peak list of MSI data |
| filterPeaks.data.frame | Filter peak list of MSI data |
| filterPeaks.msimat | Filter peak list of MSI data |
| hist.massdiff | Histogram method for massdiff object |
| histWeighted | Correlation-weighted histogram of massdiff object |
| identify.msimat | Identify peak on mass spectrum plot |
| image.msimat | Plot mass spectrometry imaging image of a msimat object |
| mass2adduct | Mass Spectrometry Imaging Molecular Adduct Finder |
| massdiff | Tabulate pairwise combinations of mass peaks |
| msimat | Read mass spectrometry imaging data |
| msimatreadcsv | Read CSV file to msimat object |
| msimatreadtriplet | Read triplet files to msimat object |
| pickAdductPairImage | Display parent/adduct ion pair MSI images |
| plot.massdiffhist | Plot massdiffhist histogram with named adducts labeled |
| plot.msimat | Plot method for object msimat |
| pointsAdducts | Overlay adduct parental and adduct masses on plot of msimat... |
| points.msimat | Points method for object msimat |
| print.msimat | Print method for class msimat |
| subtractPeaks | Remove peaks within specified mass accuracy |
| subtractPeaks.msimat | Remove peaks from an msimat object within specified mass... |
| subtractPeaks.numeric | Remove peaks from a peaklist within specified mass accuracy |
| summary.massdiff | Summary method for class massdiff |
| sumPeakIntensities | Sum total pixel intensities per peak and report as data frame |
| topAdducts | Find top adduct candidates from a mass difference histogram |
