Man pages for kbseah/mass2adduct
Mass Spectrometry Imaging Molecular Adduct Finder

adductMatchFind closest-matching known adducts for a set of mass...
adductMatch.massdiffReport closest-matching adduct type for a list of mass...
adductMatch.massdiffhistReport closest-matching adduct type for a mass difference...
adductsCommon mass spectrometry adducts
adducts2Shorter list of mass spectrometry adducts
analyzeIntensityCutoffsCumulCalculate effects of applying cumulative intensity-level...
analyzeIntensityCutoffsDistrCalculate effects of applying intensity-level cutoffs on mass...
comb2MC++ version of combn function
corrPairsMSICalculate correlations of pairs of mass peaks from MSI data
corrPairsMSIchunksCalculate correlations of pairs of mass peaks from MSI data...
countPeaksFromDiffCount peaks corresponding to putative adduct types
diffGetPeaksFind pairs of mass peaks corresponding to a specific mass
diffGetPeaksIndexFind pairs of mass peaks corresponding to a specific mass...
filterPeaksFilter peak list of MSI data
filterPeaks.data.frameFilter peak list of MSI data
filterPeaks.msimatFilter peak list of MSI data
hist.massdiffHistogram method for massdiff object
histWeightedCorrelation-weighted histogram of massdiff object
identify.msimatIdentify peak on mass spectrum plot
image.msimatPlot mass spectrometry imaging image of a msimat object
mass2adductMass Spectrometry Imaging Molecular Adduct Finder
massdiffTabulate pairwise combinations of mass peaks
msimatRead mass spectrometry imaging data
msimatreadcsvRead CSV file to msimat object
msimatreadtripletRead triplet files to msimat object
pickAdductPairImageDisplay parent/adduct ion pair MSI images
plot.massdiffhistPlot massdiffhist histogram with named adducts labeled
plot.msimatPlot method for object msimat
pointsAdductsOverlay adduct parental and adduct masses on plot of msimat...
points.msimatPoints method for object msimat
print.msimatPrint method for class msimat
subtractPeaksRemove peaks within specified mass accuracy
subtractPeaks.msimatRemove peaks from an msimat object within specified mass...
subtractPeaks.numericRemove peaks from a peaklist within specified mass accuracy
summary.massdiffSummary method for class massdiff
sumPeakIntensitiesSum total pixel intensities per peak and report as data frame
topAdductsFind top adduct candidates from a mass difference histogram
kbseah/mass2adduct documentation built on Aug. 31, 2018, 5:29 a.m.