Man pages for kcha/psiplot
Generate plots of PSI values generated by vast-tools
| betaCI | Obtain CIs from the sampled values |
| config | Sample psiplot configuration settings for datasets 'psi' and... |
| convert_psi | Convert low/bad quality PSI values to NA |
| crpkm | Sample genes with cRPKM data |
| crpkm_counts | Sample genes with cRPKM and counts data |
| draw_group_means | Draw group means as horizontal lines |
| format_table | Format input event data |
| get_beta_ci | Calculate confidence intervals for error bars |
| get_beta_ci_subg | Calculate conficence intervals for error bars of subgrouped... |
| get_psi_samples | Get samples from PSI input table |
| gg_color_hue | Simulate default ggplot2 color palette |
| make_title | Make plot title |
| make_title.2 | Make plot title (version 2) |
| plot_event | Plot PSI values of a given alternative splicing event |
| plot_expr | Plot cRPKM values of a given gene |
| plot_multi | Plot multiple events or genes as a heatmap (experimental) |
| plot_multievent | Plot PSI values of multiple alternative splicing events |
| preprocess_sample_colors | Preprocess PSI or cRPKM data frame using configuration file |
| psi | Sample events with PSI data |
| psiplot | Produce PSI and GE plots based on output from vast-tools |
