make.blacklist: Make a list of regions of the genome in which there is...
In kcygan/fragCounter: GC mappability correction and segmentation
Description
Usage
Arguments
Value
Author(s)
Description
Look at all available normal samples and find regions where some percentage of all normal samples have at least 1 read
Usage
1
make.blacklist(pairs, cutoff = 0.9, mc.cores = mc.cores)
Arguments
pairs
string Input data.table with columns 'pair' and 'bam' corresponding to the sample name and bath to normal bam
cutoff
double Threshold for what percentage of normal samples must have reads for the region to be included
Value
Data.table of regions to include when calculating corrected reads
Author(s)
Trent Walradt
kcygan/fragCounter documentation built on Feb. 13, 2020, 12:34 a.m.
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Description Usage Arguments Value Author(s)
Description
Look at all available normal samples and find regions where some percentage of all normal samples have at least 1 read
Usage
1 | make.blacklist(pairs, cutoff = 0.9, mc.cores = mc.cores)
|
Arguments
pairs |
string Input data.table with columns 'pair' and 'bam' corresponding to the sample name and bath to normal bam |
cutoff |
double Threshold for what percentage of normal samples must have reads for the region to be included |
Value
Data.table of regions to include when calculating corrected reads
Author(s)
Trent Walradt
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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