README.md

In kdaily/shinyPathway: Visualize Pathway Commons Pathways with Shiny

shinyPathway

Here for the Mozilla Science Global Sprint 2016? Hooray!

See here for more details of this project in the context of the global sprint.

1. Read the Contributing document
2. Read the Code of Conduct
3. Check out the open issues

This project is in it's infancy - I'll be getting it going on Day 1 of the Mozilla Science Global Sprint (June 2, @ 9am PST).

Introduction

Use R Shiny for exploratory analysis of Pathway Commons pathways through r-cytoscape.js.

Install

This package has dependencies from Bioconductor. It also requires devtools.

setRepositories(ind=1:6)
options(repos="http://cran.rstudio.com/")
if(!require(devtools)) { install.packages("devtools") }
devtools::install_github('kdaily/shinyPathway')

Run the Shiny App

shinyPathway::runExample()

kdaily/shinyPathway documentation built on May 20, 2019, 8:28 a.m.