README.md

In kdorheim/MEMC: Microbial Explicit Model Comparison: a R package supporting model exploration

IN DEVELOPMENT!

About

MEMC is a R package representation of different microbial explicit carbon models in a flexible framework for model comparison exercises.

Getting Started Using MEMC

Follow the download and installation insturctions for R and R studio.

For developers

Clone the repository to install the package in development mode using the devtools::load_all() call in R studio from the root directory. Please refer to r-pkgs for more information on how to build and develop R packages.

For users

Use remotes to install MEMC as a built R package directory from github.

# use install.packages("remotes") to install this package the first time.
library(remotes)

# Now build and install the R package on your local machine.
install_github('Microbial-Explicit-Model/MEMC') 

kalyn so things to do in the configure model function set up the ability to name the model --> should be added to the run model function there should be some way during the model configuration to modify the flux functions... can still have a mip function what will be the easiest way to build some of the core model configurations....

kdorheim/MEMC documentation built on Jan. 14, 2022, 9:13 a.m.