solver: Sovle for a MENDplus model set up.

In kdorheim/MENDplus: The microbial-enzyme-mediated decomposition model (MEND) with flexible kinetic and environmental conditions

Description

Based on user defined carbon pools and flux functions solve a system of equations.

Usage

solver(params, time, state, carbon_pools_func, carbon_fluxes_func, ...)

Arguments

params	data.table containing the following columns: parameter, value, and units.
time	a vector of the time setps
state	a vector of the intial state values, must be named
carbon_pools_func	a function defining the carbon pools
carbon_fluxes_func	a function defining the carbon fluxes between pools
...	additional arguments that can be read into deSolve::ode

Value

a long formatted data.table of the simulation results

See Also

Other helper function: modify_fluxes_func()

kdorheim/MENDplus documentation built on Sept. 18, 2020, 6:18 p.m.