kellybotero/G2F: Find and Fill Gaps in Metabolic Networks

For a given metabolic network, this package finds the gaps (metabolites not produced or not consumed in any other reaction), and fills it from the stoichiometric reactions of a reference metabolic reconstruction using a weighting function. Also the option to download all the set of gene-associated stoichiometric reactions for a specific organism from the KEGG database <http://www.genome.jp/kegg/> is available.

Getting started

Package details

Maintainer
LicenseGPL-2
Version0.3
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("kellybotero/G2F")
kellybotero/G2F documentation built on Sept. 4, 2018, 4:31 a.m.