API for kellycochran/IsoDB
Framework for Analyzing Diverse Isoform Populations
| Global functions | |
|---|---|
| .onAttach | Source code |
| CH | Source code |
| Database | Source code |
| L2_dist | Source code |
| RawDatabase | Source code |
| add_ORF_info | Source code |
| add_ORF_sequences | Source code |
| add_abundance_data | Source code |
| add_diversity_indeces | Source code |
| add_gene_names_to_transcripts | Source code |
| add_gff_info | Source code |
| add_isoform_info | Source code |
| add_transcript_lengths | Source code |
| calc_abundances | Source code |
| check_for_match | Source code |
| cluster_isoforms | Source code |
| compile_raw_db | Source code |
| ex_to_rect_coords | Source code |
| filter_db | Source code |
| filter_db_by_ID | Source code |
| filter_top_gff | Source code |
| filter_truncations | Source code |
| get_all_line_data | Source code |
| get_all_rect_data | Source code |
| get_colors | Source code |
| get_end_of_isoform | Source code |
| get_gff_data | Source code |
| get_kmer_counts | Source code |
| get_line_data | Source code |
| get_orf_sequences | Source code |
| get_rect_data | Source code |
| get_tmp_tsv_file | Source code |
| get_transcript_sequences | Source code |
| is_tsv_format | Source code |
| jellyfish_plot | Source code |
| kmer_PCA | Source code |
| kmer_tSNE | Source code |
| make_ORF_db | Source code |
| plot_3D_PCA | Source code |
| plot_N50_N75 | Source code |
| plot_PCA | Source code |
| plot_Shannon_index | Source code |
| plot_counts | Source code |
| plot_exon_correlations | Source code |
| plot_exon_dist | Source code |
| plot_length_dist | Source code |
| plot_splicing | Source code |
| plot_tSNE | Source code |
| plot_treemap | Source code |
| process_db | Source code |
| read_tsv_file | Source code |
| seq_to_string | Source code |
| string_to_seq | Source code |
| weighted_corr | Source code |
| write_gff_data | Source code |
