conditional_plot_sexcheck: Conditionally wrap plot_sexcheck for targets

In kelshmo/sageseqr: Identify differentially expressed genes counts data

Conditionally wrap plot_sexcheck for targets

Description

Work around to expose plot_sexcheck to testing and export but also leverage targets function for skipping targets conditionally (see "targets::tar_cancel()").

Usage

conditional_plot_sexcheck(clean_metadata, count_df, biomart_results, sex_var)

Arguments

clean_metadata	A data frame with sample identifiers as rownames and variables as factors or numeric as determined by "sageseqr::clean_covariates()".
count_df	A counts data frame with sample identifiers as column names and gene Ids are rownames.
biomart_results	Output of "sageseqr::get_biomart()". Gene Ids are stored as rownames.
sex_var	Column name of the sex or gender-specific metadata.

kelshmo/sageseqr documentation built on June 13, 2024, 10:48 p.m.