Files in kelsiereinaltt/GSEAplot
GSEA Analysis and Plotting Function
.DS_Store
.Rbuildignore
.Rhistory
.Rproj.user/C00FBBA4/console06/INDEX001
.Rproj.user/C00FBBA4/cpp-definition-cache
.Rproj.user/C00FBBA4/pcs/files-pane.pper
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.Rproj.user/C00FBBA4/persistent-state
.Rproj.user/C00FBBA4/rmd-outputs
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.Rproj.user/C00FBBA4/sources/prop/5A74B748
.Rproj.user/C00FBBA4/sources/prop/INDEX
.Rproj.user/ED9D9A1D/console06/INDEX001
.Rproj.user/ED9D9A1D/cpp-definition-cache
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.Rproj.user/ED9D9A1D/persistent-state
.Rproj.user/ED9D9A1D/rmd-outputs
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.Rproj.user/ED9D9A1D/sources/prop/INDEX
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.Rproj.user/ED9D9A1D/sources/s-99272E5A/1C05CD29-contents
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.Rproj.user/ED9D9A1D/sources/s-99272E5A/C284190-contents
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.Rproj.user/shared/notebooks/patch-chunk-names
.Rproj.user/shared/notebooks/paths
.gitignore
DESCRIPTION
GSEAplot-manual.pdf
GSEAplot.vignette.pdf
NAMESPACE
R/.DS_Store
R/.Rhistory
R/GSEA.1.0-mod.R
R/Run.GSEA.R
R/create_phenoinput.R
R/gene_input.R
R/plot.ES.R
README.md
data/C1.gs.rda
data/C2.cgp.gs.rda
data/C2.cp.biocarta.gs.rda
data/C2.cp.gs.rda
data/C2.cp.kegg.gs.rda
data/C2.cp.reactome.gs.rda
data/C2.gs.rda
data/C3.gs.rda
data/C3.mir.gs.rda
data/C3.tft.gs.rda
data/C4.cgn.gs.rda
data/C4.cm.gs.rda
data/C4.gs.rda
data/C5.bp.gs.rda
data/C5.cc.gs.rda
data/C5.gs.rda
data/C5.mf.gs.rda
data/C6.gs.rda
data/C7.gs.rda
data/ENCODE.db.rda
data/ITFP.db.rda
data/Kadoki_ligands.db.rda
data/Kadoki_receptors.db.rda
data/Marbach2016.db.rda
data/Neph2012.db.rda
data/Neph2012_AcutePromyelocyticLeukemia.db.rda
data/Neph2012_AdultBloodMicrovascularEndothelialCells.db.rda
data/Neph2012_AdultDermalFibroblast.db.rda
data/Neph2012_AmnioticEpithelialCells.db.rda
data/Neph2012_AorticAdventitialFibroblasts.db.rda
data/Neph2012_AstrocytesHippocampal.db.rda
data/Neph2012_Bcells.db.rda
data/Neph2012_Blymphocyte.db.rda
data/Neph2012_Blymphocyte2.db.rda
data/Neph2012_Brain.db.rda
data/Neph2012_CardiacFibroblasts.db.rda
data/Neph2012_CardiacMyocytes.db.rda
data/Neph2012_ChoroidPlexusEpithelialCells.db.rda
data/Neph2012_EmbryonicStemCell.db.rda
data/Neph2012_EsophagealEpithelialCells.db.rda
data/Neph2012_FetalLungFibroblasts.db.rda
data/Neph2012_ForeskinFibroblast.db.rda
data/Neph2012_Heart.db.rda
data/Neph2012_HematopoeticProgenitor.db.rda
data/Neph2012_Hepatocellularcarcinoma.db.rda
data/Neph2012_IrisPigmentEpithelialCells.db.rda
data/Neph2012_Leukemia.db.rda
data/Neph2012_Lung.db.rda
data/Neph2012_LungFibroblasts.db.rda
data/Neph2012_LymphaticMicrovascularEndothelialCells.db.rda
data/Neph2012_MammaryFibroblasts.db.rda
data/Neph2012_NeonatalBloodMicrovascularEndothelialCells.db.rda
data/Neph2012_NeonatalDermalFibroblast.db.rda
data/Neph2012_NeonatalLymphaticMicrovascularEndothelialCells.db.rda
data/Neph2012_Neuroblastoma.db.rda
data/Neph2012_NormalHumanAstrocytes.db.rda
data/Neph2012_PeridontalLigamentFibroblasts.db.rda
data/Neph2012_PulmonaryArteryFibroblasts.db.rda
data/Neph2012_PulmonaryFibroblastsLungTissue.db.rda
data/Neph2012_RenalCorticalEpithelialCells.db.rda
data/Neph2012_SkeletalMuscleMyoblasts.db.rda
data/Neph2012_SkeletalMuscleMyosatellitecells.db.rda
data/Neph2012_Skin.db.rda
data/Neph2012_SmallAirwayEpithelialCells.db.rda
data/Neph2012_Th1Tcells.db.rda
data/Neph2012_VillousMesencymalFibroblastCells.db.rda
data/Neph2012_cellline_key.rda
data/TRED.db.rda
data/TRRUST.db.rda
data/aagmex_expr.rda
data/aagmex_pheno.rda
data/gtex_ann.rda
data/gtex_expr.rda
data/hallmark.gs.rda
data/key.rda
data/transf.rda
data/transm.rda
man/GSEA_Source.Rd
man/GSEAplots.Rd
man/add_to_database.Rd
man/create_geneset_db.Rd
man/create_phenoinput.Rd
man/database_key.Rd
man/get_genesets.Rd
man/get_genesymbols.Rd
man/plot.ES.Rd
