README.md

associatr: Genetic Association Plots

Lifecycle: experimental Travis build status Codecov test coverage

Overview

associatr is an R package for manhattan and regional plots. By default only variants with p < 0.001 are plotted in the manhattan plot. Region plots use LDlinkR to retrieve LD and SQL queries to UCSC genome browser to get biological context.

Installation

devtools::install_github("kenhanscombe/associatr", dependencies = TRUE, force = TRUE)

Note. region requires an LDlinkR personal access token. Request token.



kenhanscombe/associatr documentation built on Nov. 13, 2020, 9:24 a.m.