Man pages for kenhanscombe/ukbtools
Manipulate and Explore UK Biobank Data
| icd10chapters | International Classification of Diseases Revision 10 (ICD-10)... |
| icd10codes | International Classification of Diseases Revision 10 (ICD-10)... |
| icd9chapters | International Classification of Diseases Revision 9 (ICD-9)... |
| icd9codes | International Classification of Diseases Revision 9 (ICD-9)... |
| ukbcentre | UKB assessment centre |
| ukb_centre | Inserts UKB centre names into data |
| ukb_context | Demographics of a UKB sample subset |
| ukb_df | Reads a UK Biobank phenotype fileset and returns a single... |
| ukb_df_duplicated_name | Checks for duplicated names within a UKB dataset |
| ukb_df_field | Makes a UKB data-field to variable name table for reference... |
| ukb_df_full_join | Recursively join a list of UKB datasets |
| ukb_gen_excl | Sample exclusions |
| ukb_gen_excl_to_na | Inserts NA into phenotype for genetic metadata exclusions |
| ukb_gen_het | Heterozygosity outliers |
| ukb_gen_meta | Genetic metadata |
| ukb_gen_pcs | Genetic principal components |
| ukb_gen_read_fam | Reads a PLINK format fam file |
| ukb_gen_read_sample | Reads an Oxford format sample file |
| ukb_gen_rel | Creates a table of related individuals |
| ukb_gen_related_with_data | Subset of the UKB relatedness dataframe with data |
| ukb_gen_rel_count | Relatedness count |
| ukb_gen_samples_to_remove | Related samples (with data on the variable of interest) to... |
| ukb_gen_sqc_names | Sample QC column names |
| ukb_gen_write_bgenie | Writes a BGENIE format phenotype or covariate file. |
| ukb_gen_write_plink | Writes a PLINK format phenotype or covariate file |
| ukb_gen_write_plink_excl | Writes a PLINK format file for combined exclusions |
| ukb_icd_code_meaning | Retrieves description for a ICD code. |
| ukb_icd_diagnosis | Retrieves diagnoses for an individual. |
| ukb_icd_freq_by | Frequency of an ICD diagnosis by a target variable |
| ukb_icd_keyword | Retrieves diagnoses containing a description. |
| ukb_icd_prevalence | Returns the prevalence for an ICD diagnosis |
| ukbtools | ukbtools: Manipulate and Explore UK Biobank Data |
