ukb_gen_het | R Documentation |
defunct
Heterozygosity outliers are typically removed from genetic association analyses. This function returns either a vector of heterozygosity outliers to remove (+/- 3sd from mean heterozygosity), or a data frame with heterozygosity scores for all samples.
ukb_gen_het(data, all.het = FALSE)
data |
A UKB dataset created with |
all.het |
Set |
UKB have published full details of genotyping and quality control for the interim genotype data.
A vector of IDs if all.het = FALSE
(default), or a dataframe with ID, heterozygosity and PCA-corrected heterozygosity if all.het = TRUE
.
## Not run: #' # Heterozygosity outliers (+/-3SD) outlier_het_ids <- ukb_gen_het(my_ukb_data) # Retrieve all raw and pca-corrected heterozygosity scores ukb_het <- ukb_gen_het(my_ukb_data, all.het = TRUE) ## End(Not run)
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