read_nmtables: Reads NONMEM output tables.

In kestrel99/pmxTools: Pharmacometric and Pharmacokinetic Toolkit

Reads NONMEM output tables.

Description

Reads NONMEM output tables.

Usage

read_nmtables(
  tableFiles = NULL,
  runNo = NULL,
  tabSuffix = "",
  tableNames = c("sdtab", "mutab", "patab", "catab", "cotab", "mytab", "extra", "xptab"),
  quiet = FALSE,
  directory = NULL,
  output_type = c("data.frame", "list"),
  ...
)

Arguments

tableFiles	NONMEM table files to be read.
runNo	Run number.
tabSuffix	Table file suffix.
tableNames	List of root table names, using the Xpose naming convention as the default.
quiet	Flag for displaying intermediate output.
directory	The directory to look for files within. If NULL, uses the current directory.
output_type	Should output be a "data.frame" where all results are merged or a "list" of data.frames.
...	Passed to each of the read functions (ignored in the functions).

Value

A data.frame or list of data.frames depending on the output_type argument.

Note

Adapted from Xpose 4 (https://CRAN.R-project.org/package=xpose4).

Author(s)

Bill Denney, Justin Wilkins, Niclas Jonsson, Andrew Hooker

References

NONMEM (https://www.iconplc.com/innovation/nonmem/)

Jonsson EN, Karlsson MO. Xpose–an S-PLUS based population pharmacokinetic/pharmacodynamic model building aid for NONMEM. Comput Methods Programs Biomed. 1999 Jan;58(1):51-64

See Also

Other NONMEM reading: plot_scm(), read_nm_all(), read_nm_multi_table(), read_nmcov(), read_nmext(), read_nm(), read_scm()

Examples

## Not run: 
tables <- read_nmtables(runNo=315)

## End(Not run)

kestrel99/pmxTools documentation built on Feb. 25, 2023, 1:26 p.m.