parseEpigeneticData: Parses epigenetic gene's expression values from .csv files

In kevbobli224/EpiGPlot: Visualization of epigenetic factors

Description

.csv file must contain 4 columns, separated by tabs. The column must contain following data in a particular order: sample class, sample name, expression value, and quantile range. .csv files regarding epigenetic file data can be obtained through EpiFactors website.

Usage

parseEpigeneticData(data)

Arguments

data	A file name for the epigenetic gene expression values file including the .csv suffix

Value

Returns a data frame containing 4 columns of: Sample class, sample name, expression value, and quantile range.

References

Medvedeva, Y. A., Lennartsson, A., Ehsani, R., Kulakovskiy, I. V., Vorontsov, I. E., Panahandeh, P., Khimulya, G., Kasukawa, T., & Drabløs, F. (2015). Epifactors: A comprehensive database of human epigenetic factors and complexes. Database, 2015. Link

Examples

## Not run: 
data <- parseEpigeneticData("./inst/extdata/expressions.csv")
dim(data) # 889 4

## End(Not run)

kevbobli224/EpiGPlot documentation built on Dec. 21, 2021, 6:35 a.m.