Man pages for kevinblighe/scToolkit
scDataviz: single cell dataviz and downstream analyses
| basetheme | Package-wide, non-user function used to set a base 'ggplot2'... |
| clusKNN | A wrapper function for 'Seurat"s 'FindNeighbors' and... |
| contourPlot | Draw a contour plot, typically relating to co-ordinates of a... |
| downsampleByVar | Downsample an input data-frame or matrix based on variance. |
| importData | Import a data-frame or matrix, and associated metadata, to a... |
| markerEnrichment | Find enriched markers per identified cluster and calculate... |
| markerExpression | Highlight the individual marker expression profile across a... |
| markerExpressionPerCluster | Generate box-and-whisker plots illustrating marker expression... |
| metadataPlot | Colour shade a 2-dimensional reduction / embedding based on... |
| performUMAP | Perform UMAP on an input data-frame or matrix, or... |
| plotClusters | Highlight cell-to-cluster assignments across a 2-dimensional... |
| plotSignatures | Find enriched markers per identified cluster and visualise... |
| processFCS | Input, filter, normalise, and transform FCS expression data. |
