gr.genome: create GRanges of full genome coordinates

In kevinmhadi/khtools: Making Mskilab Life Easier

create GRanges of full genome coordinates

Description

Grabs *.chrom.sizes file from environmental variable "DEFAULT_GENOME" or "DEFAULT_BSGENOME" May need to set either of these via Sys.setenv(DEFAULT_BSGENOME = "path_to_ref.chrom.sizes") Sys.setenv(DEFAULT_GENOME = "path_to_ref.chrom.sizes")

Usage

gr.genome(si, onlystandard = TRUE, genome = NULL)

Value

GRanges

Author(s)

Kevin Hadi

kevinmhadi/khtools documentation built on Feb. 14, 2025, 10:25 a.m.