sv_filter: filter sv by overlaps with another
In kevinmhadi/khtools: Making Mskilab Life Easier
sv_filter R Documentation
filter sv by overlaps with another
Description
To filter out a grangeslist of sv by another grangeslist of SV
Usage
sv_filter(sv, filt_sv, pad = 500)
Arguments
sv
GRangesList with all elements length 2 (specifying breakpoint pairs of a junction)
filt_sv
GRangesList with all elements length 2 (usually a pon)
pad
Exposed argument to skitools::ra.overlaps()
Value
GRangesList of breakpoint pairs with junctions that overlap removed
kevinmhadi/khtools documentation built on Jan. 16, 2025, 4:18 p.m.
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| sv_filter | R Documentation |
filter sv by overlaps with another
Description
To filter out a grangeslist of sv by another grangeslist of SV
Usage
sv_filter(sv, filt_sv, pad = 500)
Arguments
sv |
GRangesList with all elements length 2 (specifying breakpoint pairs of a junction) |
filt_sv |
GRangesList with all elements length 2 (usually a pon) |
pad |
Exposed argument to skitools::ra.overlaps() |
Value
GRangesList of breakpoint pairs with junctions that overlap removed
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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