Man pages for kevinrue/GOexpress-original
Visualise microarray and RNAseq data using gene ontology annotations
| AlvMac | Sample data from a RNAseq experiment. |
| AlvMac_allgenes | Example of custom gene feature annotations. |
| AlvMac_allGO | Example of custom gene ontology annotations. |
| AlvMac_GOgenes | Example of custom mapping between gene ontology identifiers... |
| AlvMac_results | Sample output from the 'GO_analyse()' function on an RNAseq... |
| AlvMac_results.pVal | Sample output from the 'pValue_GO()' function on an RNAseq... |
| cluster_GO | Generates a hierarchical clustering of the samples |
| expression_plot | Plots the expression profile of a gene by levels of a factor |
| expression_plot_symbol | Plots the expression profile of a gene by levels of a factor |
| expression_profiles | Plots the individual expression profile of a gene in samples... |
| expression_profiles_symbol | Plots the individual expression profile of a gene in samples... |
| GO_analyse | Identifies gene ontologies clustering samples according to... |
| GOexpress-package | Visualise microarray and RNAseq data with gene ontology... |
| heatmap_GO | Generates a heatmap and hierarchical clustering of the... |
| hist_scores | Plots the distribution of scores following an GOexpress... |
| list_genes | Returns the genes associated with a Gene Ontology |
| microarray2dataset | Table mapping probeset identifier prefixes to datasets in the... |
| overlap_GO | Shared genes between a list of GO terms. |
| plot_design | Plot Univariate Effects for genes associated with a Gene... |
| prefix2dataset | Table mapping Ensembl gene identifier prefixes to BioMart... |
| pValue_GO | Compute p-values for ontologies by randomising gene labels. |
| quantiles_scores | Returns the quantiles of scores following an GOexpress... |
| rerank | Reorder the result variable by alternative metrics. |
| subEset | Subset an ExpressionSet to values of phenotypic data columns. |
| subset_scores | Returns a filtered list from GO_analyse results. |
| table_genes | Returns a table listing the genes associated with a given... |
