Description Usage Arguments Details Value Note Author(s) See Also Examples
View source: R/post_analysis.R
Reorder the ranked tables of GO terms and genes either by increasing (average) rank or decreasing (average) score.
1  rerank(result, rank.by = 'rank')

result 
The output of 
rank.by 
Either of 'rank', 'score' or 'p.val'; the metric to rank the GO terms and
genes. Note that 'pval' is only applicable on the output of the

Taking an example, to rank GO terms by Pvalue and break ties by average rank, rerank first by 'rank', and then rerank the resulting object by 'p.val'.
A list formatted identically to the results of the analysis, but ordered by the chosen metric.
The name reorder() was not used to avoid conflict with package stats
.
Kevin RueAlbrecht
Method GO_analyse
.
1 2 3 4 5 6 7 8 9 10 11 12 13 14  # load the sample output data
data(AlvMac_results)
# Rerank the GO terms and genes based on the actual score instead of the rank
reranked.byScore < rerank(result=AlvMac_results, rank.by="score")
# load the sample output data with p.values computed
data(AlvMac_results.pVal)
# To rank by Pvalue, while breaking the ties by ave_rank,
# rank first by ave_rank
reranked.byRank < rerank(result=AlvMac_results.pVal, rank.by="rank")
# rank the result by Pvalue
reranked.pVal_rank < rerank(result=reranked.byRank, rank.by="p.val")

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