uniqueMarkerNames: Extract Unique Signature Names from a Collection of Gene Sets

In kevinrue/hancock: Learn and Apply Cell Type Signatures

Description

uniqueMarkerNames and uniqueSetNames extract the character vectors of unique marker and set names from objects that store collections of gene sets.

Usage

uniqueMarkerNames(object)

uniqueSetNames(object)

## S4 method for signature 'GeneSetCollection'
uniqueMarkerNames(object)

## S4 method for signature 'GeneSetCollection'
uniqueSetNames(object)

## S4 method for signature 'Sets'
uniqueMarkerNames(object)

## S4 method for signature 'Sets'
uniqueSetNames(object)

Arguments

object

An object of class inheriting from Sets or GeneSetCollection.

Value

A character vector of unique set or marker names across all gene sets.

Author(s)

Kevin Rue-Albrecht

Examples

# Example data ----

library(unisets)
gmt <- system.file(package = "hancock", "extdata", "seurat_pbmc3k.gmt")
genesets <- import(gmt)

# Usage ----
um <- uniqueMarkerNames(genesets)
us <- uniqueSetNames(genesets)

kevinrue/hancock documentation built on May 17, 2020, 7:55 a.m.