s_matrixlm: Checks for non-zero slope in linear models of connected NTUs

In kevinvergin/BATSLSA: R scripts for the analysis of data presented in the article "Marine bacterioplankton consortia follow deterministic, non-neutral community assembly rules" by Vergin et al.

Description

For potential network connections between two nodal taxonomic units (NTUs), verifies that the slope of a linear model is non-zero by ensuring that the p value for the line is greater than 0.05

Usage

s_matrixlm(matrix, boolean, fn)

Arguments

inputParameter1	matrix of NTU abundances in rows and sample dates in columns inputParameter1
inputParameter2	boolean is a matrix of 1's and 0's from the LSA code indicating which NTUs are connected (1's) inputParameter2
inputParameter3	fn is a file name for the output inputParameter3

Value

output A boolean matrix of connections that pass. Results are in the upper triangle.

Examples

s_matrixlm(matrix=deep_popcounts, boolean=combSPdeep,fn="lmconfirmation_200.csv")

kevinvergin/BATSLSA documentation built on May 20, 2019, 9:20 a.m.