API for kfuku52/rkftools
Tools for Evolutionary Biology
| Global functions | |
|---|---|
| MAD | Source code |
| calc_complementarity | Source code |
| collapse_clades | Source code |
| collapse_short_branches | Source code |
| collapse_short_external_edges | Source code |
| contains_polytomy | Source code |
| fill_node_labels | Source code |
| force_ultrametric | Source code |
| get_ancestor_num | Source code |
| get_bootstrap_table | Source code |
| get_children_num | Source code |
| get_deepest_node_num | Source code |
| get_descendent_num | Source code |
| get_duplication_confidence_score | Source code |
| get_high_similarity_clades | Source code |
| get_leaf_regimes | Source code |
| get_leaf_table | Source code |
| get_nearest_tips | Source code |
| get_node_age | Source code |
| get_node_name_by_num | Source code |
| get_node_num_by_name | Source code |
| get_outgroup | Source code |
| get_parent_num | Source code |
| get_parsed_args | Source code |
| get_phy2_root_in_phy1 | Source code |
| get_placeholder_leaf | Source code |
| get_placeholder_regime | Source code |
| get_placeholder_tree | Source code |
| get_regime_table | Source code |
| get_root_num | Source code |
| get_root_position_dependent_species_overlap_scores | Source code |
| get_rooted_newick | Source code |
| get_single_branch_tree | Source code |
| get_sister_num | Source code |
| get_species_name | Source code |
| get_species_names | Source code |
| get_species_overlap_score | Source code |
| get_tip_labels | Source code |
| get_tip_labels_obsolete | Source code |
| get_tree_table | Source code |
| has_same_leaves | Source code |
| is.blank | Source code |
| is_same_root | Source code |
| leaf2species | Source code |
| leaf_table_collapse2original | Source code |
| map_node_num | Source code |
| merge_replicates | Source code |
| multi2bi_node_number_transfer | Source code |
| pad_short_edges | Source code |
| read_notung_parsable | Source code |
| regime_table_collapse2original | Source code |
| remove_invariant_traits | Source code |
| remove_redundant_root_edge | Source code |
| restore_imputed_leaves | Source code |
| table2phylo | Source code |
| transfer_node_labels | Source code |
| tree_table_collapse2original | Source code |
