getPercentGlobalClusters: Evaluate how many clusters are global

In kharchenkolab/conos: Clustering on Network of Samples

Evaluate how many clusters are global

Description

Evaluate how many clusters are global

Usage

getPercentGlobalClusters(
  p2list,
  pjc,
  pc.samples.cutoff = 0.9,
  min.cell.count.per.sample = 10
)

Arguments

p2list	list of pagoda2 object on which clustering was generated
pjc	the result of joint clustering
pc.samples.cutoff	numeric The percent of the number of the total samples that a cluster has to span to be considered global (default=0.9)
min.cell.count.per.sample	numeric The minimum number of cells of cluster in sample to be considered as represented in that sample (default=10)

Value

percent of clusters that are global given the above criteria

kharchenkolab/conos documentation built on Feb. 28, 2024, 6:03 a.m.