conosShinyApp: runs Shiny application to visualize waltktrap tree and select...

In kharchenkolab/conosViz: Shiny App to Visualize Conos Dendrograms and Heatmaps

runs Shiny application to visualize waltktrap tree and select cut level

Description

runs Shiny application to visualize waltktrap tree and select cut level

Usage

conosShinyApp(
  con,
  N = 30,
  leaf.labels = NULL,
  tissue_mapping = NULL,
  tissue_factors = NULL,
  minsize = 0,
  minbreadth = 0,
  flat.cut = TRUE
)

Arguments

con	conos object with walktrap results
N	number of top greedy splits to take
leaf.labels	leaf sample label factor, for breadth calculations - must be a named factor containing all wt$names, or if wt$names is null, a factor listing cells in the same order as wt leafs
minsize	minimum size of the branch (in number of leafs)
minbreadth	minimum allowed breadth of a branch (measured as normalized entropy)
flat.cut	whether to use a flat cut instead of a dynamic one

kharchenkolab/conosViz documentation built on Nov. 12, 2022, 11:51 p.m.