checkInputs: check inputs for consistency

View source: R/checkInputs.R

checkInputsR Documentation

check inputs for consistency

Description

check inputs for consistency

Usage

checkInputs(
  pop,
  cases,
  weather,
  spi,
  spei,
  target.date,
  start.year,
  in.seed = NULL,
  lag.lengths = c(12, 18, 24, 30, 36)
)

Arguments

pop

County populations, a data frame with 3 variables

County

,

fips

(5 characters),

year

,

pop100K
cases

data on annual numbers of human cases in each county. A data.frame with 3 variables,

County

,

year

, and

cases

.

weather

monthly temperature and precipitation data for for each county. A data.frame with

County

,

fips

(5 characters),

year

,

month

,

tmean

, and

ppt

.

spi

monthly values of the Standardized Precipitation Index for each county.

County

,

fips

(5 characters),

year

,

month

,

spi

.

spei

monthly values of the Standardized Precipitation and Evapotranspiration Index for each county.

County

,

fips

(5 characters),

year

,

month

,

spei

.

target.date

The last date to include for calculation of lags, a character string with ISO XXX format (yyyy-mm-dd).

start.year

The first year to include in the training data. Should be coercible to integer.

in.seed

If not NULL, the starting number for the random number generator. This makes the results repeatable. If NULL, treats cases as actual data

lag.lengths

the number of months to go backwards when creating lag matrices. Numeric vector.


khelmsmith/flm_NE_WNV documentation built on June 24, 2022, 11:13 p.m.