Man pages for khufkens/junglerhythms
Process and screen raw Zooniverse's Jungle Rhythms data
| bounding_box | calculate the median bounding box for a yearly section |
| circular_linear_plot | Create species-specific linear and/or circular plot of... |
| climate_ccf | cross-correlations species pheno data with climate data |
| consecutive_timeline_sp | for fourier analysis, no missing years can be incorporated.... |
| dist_point_to_line | distance between a point and a line (orthogonal) (2D) |
| dist_point_to_point | point to point distance (pythagoras theorem) (2D) |
| event_length | Calculates event length and timing |
| extract_annotations | Extract all phenology dates |
| format_zoo_data | Reads in Jungle Rhythms classification output file (CSV) and... |
| intersect_line_circle | line circle intersection (2D) calculates line intersections... |
| line_intersection | Calculate line intersection when provided four coordinaes... |
| line_sections | Extract line sections from annotations |
| luki_circular_linear_plot | Create linear plot of phenology data |
| missing_years | In the full dataset, for each individual, obervation years... |
| overview_stats | Calculates summary statistics / characteristics at... |
| panel_plot | Panel plot of annotations |
| peak_detection | Peak detection and cyclicity using fourier transform |
| plot_raw_annotations | Plot raw annotations |
| plot_weekly_annotations | Plot weekly annotations |
| proj_point_on_line | orthogonal projection of a point onto a line (2D) |
| row_locations | calculate the approximate location of the rows |
| standlevel_phen | stand-level annual phenological signal species-specific... |
| standlevel_phen_plotlevel | plot-level annual phenological signal species-specific annual... |
| summarize_annotations | Summarize annotations into weekly values |
