Files in khufkens/junglerhythms

Process and screen raw Zooniverse's Jungle Rhythms data

.Rbuildignore

.github/workflows/deploy_docs.yaml

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

R/Pierlot_standlevel_phen_plotlevel.R R/bounding_box.R R/circular_linear_plots.R R/climate_ccf_function.R R/consec_years.R R/event_length.R R/extract_annotations.R R/format_zoo_data.R R/fourier_function_species_level.R R/geometry_functions.R R/line_sections.R R/luki_circular_linear.R R/plot_observations.R R/plot_weekly_annotations.R R/row_locations.R R/standlevel_phen.R R/standlevel_phen_plotlevel.R R/summarize_annotations.R R/summary_stats.R R/timeline_gap_fill.R README.md analysis/Pierlot_analysis/01_Pierlot_summary_phenophase_characteristics.R analysis/Pierlot_analysis/02_Pierlot_species_visualization_SI.R analysis/Pierlot_analysis/03_Pierlot_species_visualization_annual_cycles.R analysis/Pierlot_analysis/04_Pierlot_fourier_species_level.R analysis/Pierlot_analysis/05_Pierlot_onset_phenophases.R analysis/Pierlot_analysis/06_Pierlot_cross_correlation_climate_phen.R analysis/Pierlot_analysis/07_Pierlot_species_summary_table.R analysis/Pierlot_analysis/09_Pierlot_standlevel_aggregated_pattern.R analysis/Pierlot_analysis/10_Pierlot_standlevel_group_patterns.R analysis/Pierlot_analysis/11_remote_sensing_plot.R analysis/leaf_phenology/00_data_cleanup.R analysis/leaf_phenology/01_species_visualization_annual_cycles.R analysis/leaf_phenology/02_species_visualization_SI.R analysis/leaf_phenology/03_summary_phenophase_characteristics.R analysis/leaf_phenology/04_fourier_species_level.R analysis/leaf_phenology/05_onset_phenophases.R analysis/leaf_phenology/06_cross_correlations_climate_phen.R analysis/leaf_phenology/07_species_summary_table.R analysis/leaf_phenology/08_remote_sensing_plot.R analysis/leaf_phenology/09_standlevel_aggregated_patterns.R analysis/leaf_phenology/10_standlevel_group_patterns.R analysis/manuscripts_ongoing/convert_luki_data.R analysis/manuscripts_ongoing/fft_spans.R analysis/manuscripts_ongoing/fourier_function_individual_level.R analysis/manuscripts_ongoing/luki_perspective.R analysis/manuscripts_ongoing/luki_species_names.R analysis/manuscripts_ongoing/meta_data_correction.R analysis/manuscripts_ongoing/plot_id_timelines.R analysis/manuscripts_ongoing/standlevel_timeline.R analysis/manuscripts_ongoing/summary_plots.R analysis/manuscripts_ongoing/timeseries_for_modeling.R

junglerhythms.Rproj

man/bounding_box.Rd man/circular_linear_plot.Rd man/climate_ccf.Rd man/consecutive_timeline_sp.Rd man/dist_point_to_line.Rd man/dist_point_to_point.Rd man/event_length.Rd man/extract_annotations.Rd man/format_zoo_data.Rd man/intersect_line_circle.Rd man/line_intersection.Rd man/line_sections.Rd man/luki_circular_linear_plot.Rd man/missing_years.Rd man/overview_stats.Rd man/panel_plot.Rd man/peak_detection.Rd man/plot_raw_annotations.Rd man/plot_weekly_annotations.Rd man/proj_point_on_line.Rd man/row_locations.Rd man/standlevel_phen.Rd man/standlevel_phen_plotlevel.Rd man/summarize_annotations.Rd

manuscript/leaf_phenology/figures/Pierlot_fig1.png

manuscript/leaf_phenology/figures/Pierlot_fig2.png

manuscript/leaf_phenology/figures/Pierlot_fig3.png

manuscript/leaf_phenology/figures/Pierlot_fig4.png

manuscript/leaf_phenology/figures/Pierlot_fig5.png

manuscript/leaf_phenology/figures/Pierlot_fig6.png

manuscript/leaf_phenology/figures/fig1.png

manuscript/leaf_phenology/figures/fig2.png

manuscript/leaf_phenology/figures/fig3.png

manuscript/leaf_phenology/figures/fig4.png

manuscript/leaf_phenology/figures/fig5.png

pkgdown/_pkgdown.yml

vignettes/images/annotation.png

vignettes/images/notes.jpg

vignettes/images/notes_2.jpg

vignettes/images/observation_sheet.png

vignettes/images/outline.png

vignettes/images/polygon.png

vignettes/images/sheet.jpg

vignettes/images/single_year.jpg

vignettes/images/tags.png

vignettes/workflow.Rmd

khufkens/junglerhythms documentation built on Jan. 4, 2024, 4:59 p.m.