Man pages for khufkens/phenor
An R phenology Modelling Framework

AGSI	Accumulated growing season index model
AICc	Calculates AICc values
AT	Alternating model as defined in Basler et al. 2016 (Agr. For....
CDD	Chilling Degree Day (CDD) adapted from Jeong & Medvigny 2014...
check_npn_phenophases	Checks if USA-NPN phenophase exists
check_npn_species	Checks if USA-NPN species exists
check_pep725_species	Checks if PEP725 species name or number exists or can be...
CU	CU chilling degree model
cvmae	Coefficient of Variation of the Mean Absolute Error
daylength	Calculate daylength values
DP	DormPhot model as defined in Caffarra, Donnelly and Chuine...
DU	DU drought model
GRP	Thermal Time grassland pollen model
likelihood	Log likelihood cost function for model optimization
LIN	Linear model
M1	M1 model
M1s	M1s model
null	Null model
outlier_detection	Outlier detection of transition dates
PA	Parallel model
PAb	Parallel model
phenocam_DB	phenocam_DB
phenocam_DB_autumn	phenocam_DB_autumn
phenocam_EN	phenocam_EN
phenocam_GR	phenocam_GR
plot.pr_fit	Plotting method for fit model output
PM1	Parallel M1 model
PM1b	Parallel M1 model
pr_calc_land_cover	Calculates land cover density
pr_calc_temp_sens	Calculates the temperature sensitivity of a model (and...
pr_cross_validate	Model cross valiadation
pr_dl_be	Download Berkeley Earth Gridded mean daily temperature data
pr_dl_cmip	Download Global CMIP6 driver data
pr_dl_era5	Download Global ERA5 (land) driver data
pr_dl_npn	Download USA-NPN data using the API interface
pr_dl_pep725	Download PEP725 data
pr_fit	Fit a single phenology model
pr_fit_comparison	Fit multiple models for comparison
pr_fit_parameters	Fit parameters of a phenology model to validation data
pr_flatten	Generates a flattened 'phenor' data file
pr_fm_be	Formatting of Berkeley Earth Gridded temperature data
pr_fm_cmip	Formatting CMIP6 data
pr_fm_csv	Formatting of CSV based data
pr_fm_daymet_tiles	Formatting Daymet tiled data
pr_fm_era5	Formatting ERA5 data
pr_fm_gee	Formatting GEE data
pr_fm_modis	Format MODIS MCD12Q2 phenology data
pr_fm_npn	Formatting USA-NPN data
pr_fm_pep725	Formatting PEP725 data
pr_fm_phenocam	Format PhenoCam data
pr_fm_subset	Subset formatted phenor data
pr_merge_pep725	Merge PEP725 data files
pr_parameters	Read parameter boundary values
pr_plot_arrows	Generates an arrow plot
pr_plot_comparison	Model comparison plotting routine to faciliate model...
pr_predict	Predicts phenophases
PTT	PhotoThermal Time model
PTTs	PhotoThermal Time model
rmse	Root Mean Squared Error cost function for model optimization.
rotate_cmip	Rotate CMIP NetCDF data cubes
SGSI	Standard growing season index model
shape_model_output	Shapes model output
SM1	Sequential model (M1 variant)
SM1b	Sequential model (M1 variant)
SQ	Sequential model
SQb	Sequential model
summary.pr_fit	Print summary values for fit model output
triangular_temperature_response	Triangular temperature response function
TT	Thermal Time model
TTs	Thermal Time model
UM1	Unified M1 model
UN	Unified model